IL_9DFE_042

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUUGG*CCAUC

Length

10 nucleotides

Bulged bases

9DFE|1|1A|U|1061, 9DFE|1|1A|C|1076

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DFE_042 not in the Motif Atlas

Homologous match to IL_8VTW_042

Geometric discrepancy: 0.398

The information below is about IL_8VTW_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DFE|1|1A|G|1059
9DFE|1|1A|U|1060
9DFE|1|1A|U|1061
9DFE|1|1A|G|1062
9DFE|1|1A|G|1063
*
9DFE|1|1A|C|1075
9DFE|1|1A|C|1076
9DFE|1|1A|A|1077
9DFE|1|1A|U|1078
9DFE|1|1A|C|1079

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1Q

50S ribosomal protein L16

Chain 1Z

50S ribosomal protein L25