IL_9DFE_117

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CCUAAG*UAG

Length

9 nucleotides

Bulged bases

9DFE|1|1a|C|48, 9DFE|1|1a|A|50, 9DFE|1|1a|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DFE_117 not in the Motif Atlas

Geometric match to IL_4LFB_003

Geometric discrepancy: 0.1

The information below is about IL_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

9DFE|1|1a|C|47
9DFE|1|1a|C|48
9DFE|1|1a|U|49
9DFE|1|1a|A|50
9DFE|1|1a|A|51
9DFE|1|1a|G|52
*
9DFE|1|1a|U|359
9DFE|1|1a|A|360
9DFE|1|1a|G|361

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1l

30S ribosomal protein S12