IL_9DFE_141

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DFE_141 not in the Motif Atlas

Geometric match to IL_4LFB_027

Geometric discrepancy: 0.1154

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

9DFE|1|1a|G|654
9DFE|1|1a|A|655
*
9DFE|1|1a|U|751
9DFE|1|1a|G|752
9DFE|1|1a|A|753
9DFE|1|1a|C|754

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1h

30S ribosomal protein S8

Chain 1o

30S ribosomal protein S15