IL_9DFE_216

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGA*UUUAAAGAGUGCGUAAUAGCUCAC

Length

27 nucleotides

Bulged bases

9DFE|1|2A|U|1083, 9DFE|1|2A|A|1084, 9DFE|1|2A|A|1088, 9DFE|1|2A|A|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DFE|1|2A|G|1055
9DFE|1|2A|G|1056
9DFE|1|2A|A|1057
*
9DFE|1|2A|U|1081
9DFE|1|2A|U|1082
9DFE|1|2A|U|1083
9DFE|1|2A|A|1084
9DFE|1|2A|A|1085
9DFE|1|2A|A|1086
9DFE|1|2A|G|1087
9DFE|1|2A|A|1088
9DFE|1|2A|G|1089
9DFE|1|2A|U|1090
9DFE|1|2A|G|1091
9DFE|1|2A|C|1092
9DFE|1|2A|G|1093
9DFE|1|2A|U|1094
9DFE|1|2A|A|1095
9DFE|1|2A|A|1096
9DFE|1|2A|U|1097
9DFE|1|2A|A|1098
9DFE|1|2A|G|1099
9DFE|1|2A|C|1100
9DFE|1|2A|U|1101
9DFE|1|2A|C|1102
9DFE|1|2A|A|1103
9DFE|1|2A|C|1104

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2Q

50S ribosomal protein L16