IL_9DFE_257

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DFE_257 not in the Motif Atlas

Homologous match to IL_9DFE_084

Geometric discrepancy: 0.2345

The information below is about IL_9DFE_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DFE|1|2A|C|2108
9DFE|1|2A|U|2109
9DFE|1|2A|G|2110
*
9DFE|1|2A|C|2179
9DFE|1|2A|U|2180
9DFE|1|2A|G|2181

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains