IL_9DFE_278

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CU*AUAAG

Length

7 nucleotides

Bulged bases

9DFE|1|2A|U|2712, 9DFE|1|2A|A|2712|||A, 9DFE|1|2A|A|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DFE_278 not in the Motif Atlas

Homologous match to IL_9DFE_105

Geometric discrepancy: 0.0583

The information below is about IL_9DFE_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

9DFE|1|2A|C|2695
9DFE|1|2A|U|2696
*
9DFE|1|2A|A|2711
9DFE|1|2A|U|2712
9DFE|1|2A|A|2712|||A
9DFE|1|2A|A|2713
9DFE|1|2A|G|2714

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2R

50S ribosomal protein L17

Chain 2T

50S ribosomal protein L19