IL_9DIB_003

3D structure

PDB id

9DIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rous sarcoma virus frameshifting pseudoknot RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.68 Å

Loop

Sequence

GUUCU*ACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DIB_003 not in the Motif Atlas

Geometric match to IL_2OEU_001

Geometric discrepancy: 0.3931

The information below is about IL_2OEU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24466.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

9

Unit IDs

9DIB|1|B|G|9
9DIB|1|B|U|10
9DIB|1|B|U|11
9DIB|1|B|C|12
9DIB|1|B|U|13
*
9DIB|1|B|A|76
9DIB|1|B|C|77
9DIB|1|B|C|78

Current chains

Chain B

frameshifting pseudoknot RNA

Nearby chains