IL_9DOV_001

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

9DOV|1|A4|C|151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DOV_001 not in the Motif Atlas

Homologous match to IL_9PN5_001

Geometric discrepancy: 0.0663

The information below is about IL_9PN5_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

9DOV|1|A1|C|7
9DOV|1|A1|C|8
*
9DOV|1|A4|G|150
9DOV|1|A4|C|151
9DOV|1|A4|G|152

Current chains

Chain A1

25S rRNA

Chain A4

5.8S rRNA

Nearby chains

Chain AG

60S ribosomal protein L8-A

Chain AN

60S ribosomal protein L15-A

Chain AX

60S ribosomal protein L25