IL_9DOV_015
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 9DOV|1|A1|A|398, 9DOV|1|A1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DOV_015 not in the Motif Atlas
- Geometric match to IL_8OI5_015
- Geometric discrepancy: 0.0784
- The information below is about IL_8OI5_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.4
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 11
Unit IDs
9DOV|1|A1|G|376
9DOV|1|A1|A|377
9DOV|1|A1|A|378
9DOV|1|A1|C|379
*
9DOV|1|A1|G|390
9DOV|1|A1|A|391
9DOV|1|A1|G|392
9DOV|1|A1|U|393
9DOV|1|A1|G|394
9DOV|1|A1|A|395
9DOV|1|A1|A|396
9DOV|1|A1|A|397
9DOV|1|A1|A|398
9DOV|1|A1|A|399
9DOV|1|A1|G|400
9DOV|1|A1|U|401
9DOV|1|A1|A|402
9DOV|1|A1|C|403
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AP
- 60S ribosomal protein L17-A
- Chain AY
- 60S ribosomal protein L26-A
- Chain Al
- 60S ribosomal protein L39
Coloring options: