IL_9DOV_017

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

AAG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DOV_017 not in the Motif Atlas

Geometric match to IL_9PN5_188

Geometric discrepancy: 0.1382

The information below is about IL_9PN5_188

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

67

Unit IDs

9DOV|1|A1|A|417
9DOV|1|A1|A|418
9DOV|1|A1|G|419
*
9DOV|1|A4|C|4
9DOV|1|A4|U|5
9DOV|1|A4|U|6

Current chains

Chain A1

25S rRNA

Chain A4

5.8S rRNA

Nearby chains

Chain AP

60S ribosomal protein L17-A