IL_9DOV_021
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GAAUGUAGC*GUAUUAUAGC
- Length
- 19 nucleotides
- Bulged bases
- 9DOV|1|A1|U|534, 9DOV|1|A1|U|558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DOV|1|A1|G|531
9DOV|1|A1|A|532
9DOV|1|A1|A|533
9DOV|1|A1|U|534
9DOV|1|A1|G|535
9DOV|1|A1|U|536
9DOV|1|A1|A|537
9DOV|1|A1|G|538
9DOV|1|A1|C|539
*
9DOV|1|A1|G|552
9DOV|1|A1|U|553
9DOV|1|A1|A|554
9DOV|1|A1|U|555
9DOV|1|A1|U|556
9DOV|1|A1|A|557
9DOV|1|A1|U|558
9DOV|1|A1|A|559
9DOV|1|A1|G|560
9DOV|1|A1|C|561
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AM
- 60S ribosomal protein L14-A
- Chain AS
- 60S ribosomal protein L20
Coloring options: