IL_9DOV_030
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- (OMG)A(A2M)AG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 9DOV|1|A1|A|933, 9DOV|1|A1|G|937
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DOV_030 not in the Motif Atlas
- Homologous match to IL_9PN5_027
- Geometric discrepancy: 0.044
- The information below is about IL_9PN5_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.4
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
9DOV|1|A1|OMG|805
9DOV|1|A1|A|806
9DOV|1|A1|A2M|807
9DOV|1|A1|A|808
9DOV|1|A1|G|809
*
9DOV|1|A1|C|931
9DOV|1|A1|U|932
9DOV|1|A1|A|933
9DOV|1|A1|G|934
9DOV|1|A1|U|935
9DOV|1|A1|A|936
9DOV|1|A1|G|937
9DOV|1|A1|C|938
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AC
- Large ribosomal subunit protein uL4A
- Chain AL
- 60S ribosomal protein L13-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Aj
- 60S ribosomal protein L37-A
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