IL_9DOV_033

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DOV_033 not in the Motif Atlas

Homologous match to IL_9PN5_030

Geometric discrepancy: 0.0524

The information below is about IL_9PN5_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.5

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9DOV|1|A1|U|834
9DOV|1|A1|G|835
9DOV|1|A1|A|836
9DOV|1|A1|A|837
9DOV|1|A1|G|838
*
9DOV|1|A1|U|855
9DOV|1|A1|G|856
9DOV|1|A1|G|857
9DOV|1|A1|A|858
9DOV|1|A1|G|859

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain AR

60S ribosomal protein L19-A

Chain Ap

60S ribosomal protein L43-A