IL_9DOV_051

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

AUA*UU

Length

5 nucleotides

Bulged bases

9DOV|1|A1|U|1181

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|A1|A|1180
9DOV|1|A1|U|1181
9DOV|1|A1|A|1182
*
9DOV|1|A1|U|1324
9DOV|1|A1|U|1325

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AF

60S ribosomal protein L7-A

Chain AM

60S ribosomal protein L14-A

Chain AO

60S ribosomal protein L16-A

Chain AS

60S ribosomal protein L20

Chain Af

60S ribosomal protein L33-A