IL_9DOV_084

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

9DOV|1|A1|U|2159, 9DOV|1|A1|U|2175, 9DOV|1|A1|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|A1|C|2156
9DOV|1|A1|G|2157
9DOV|1|A1|A|2158
9DOV|1|A1|U|2159
9DOV|1|A1|G|2160
9DOV|1|A1|G|2161
*
9DOV|1|A1|U|2173
9DOV|1|A1|G|2174
9DOV|1|A1|U|2175
9DOV|1|A1|U|2176
9DOV|1|A1|G|2177
9DOV|1|A1|A|2178
9DOV|1|A1|C|2179
9DOV|1|A1|G|2180

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain Ap

60S ribosomal protein L43-A

Chain B5

Small subunit ribosomal RNA; SSU rRNA