IL_9DOV_084
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CGAUGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 9DOV|1|A1|U|2159, 9DOV|1|A1|U|2175, 9DOV|1|A1|C|2179
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DOV_084 not in the Motif Atlas
- Homologous match to IL_9PN5_081
- Geometric discrepancy: 0.0442
- The information below is about IL_9PN5_081
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14684.4
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
9DOV|1|A1|C|2156
9DOV|1|A1|G|2157
9DOV|1|A1|A|2158
9DOV|1|A1|U|2159
9DOV|1|A1|G|2160
9DOV|1|A1|G|2161
*
9DOV|1|A1|U|2173
9DOV|1|A1|G|2174
9DOV|1|A1|U|2175
9DOV|1|A1|U|2176
9DOV|1|A1|G|2177
9DOV|1|A1|A|2178
9DOV|1|A1|C|2179
9DOV|1|A1|G|2180
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain Ap
- 60S ribosomal protein L43-A
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: