IL_9DOV_092

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

9DOV|1|A1|A|2397, 9DOV|1|A1|C|2983

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DOV_092 not in the Motif Atlas

Homologous match to IL_9PN5_089

Geometric discrepancy: 0.0811

The information below is about IL_9PN5_089

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

9DOV|1|A1|G|2396
9DOV|1|A1|A|2397
9DOV|1|A1|A|2398
*
9DOV|1|A1|U|2981
9DOV|1|A1|A|2982
9DOV|1|A1|C|2983
9DOV|1|A1|C|2984

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AP

60S ribosomal protein L17-A