IL_9DOV_097

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CAUAGAGG*CUUUAUAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|A1|C|2444
9DOV|1|A1|A|2445
9DOV|1|A1|U|2446
9DOV|1|A1|A|2447
9DOV|1|A1|G|2448
9DOV|1|A1|A|2449
9DOV|1|A1|G|2450
9DOV|1|A1|G|2451
*
9DOV|1|A1|C|2496
9DOV|1|A1|U|2497
9DOV|1|A1|U|2498
9DOV|1|A1|U|2499
9DOV|1|A1|A|2500
9DOV|1|A1|U|2501
9DOV|1|A1|A|2502
9DOV|1|A1|G|2503

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Ai

60S ribosomal protein L36-A

Chain E

Large ribosomal subunit protein uL1A