IL_9DOV_099

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GGAG*CGCCAGUGAAAUAC

Length

18 nucleotides

Bulged bases

9DOV|1|A1|A|2484, 9DOV|1|A1|A|2485

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|A1|G|2466
9DOV|1|A1|G|2467
9DOV|1|A1|A|2468
9DOV|1|A1|G|2469
*
9DOV|1|A1|C|2476
9DOV|1|A1|G|2477
9DOV|1|A1|C|2478
9DOV|1|A1|C|2479
9DOV|1|A1|A|2480
9DOV|1|A1|G|2481
9DOV|1|A1|U|2482
9DOV|1|A1|G|2483
9DOV|1|A1|A|2484
9DOV|1|A1|A|2485
9DOV|1|A1|A|2486
9DOV|1|A1|U|2487
9DOV|1|A1|A|2488
9DOV|1|A1|C|2489

Current chains

Chain A1

25S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL1A

Chain EC

TSV IRES RNA