IL_9DOV_103

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UUGA*UACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|A1|U|2718
9DOV|1|A1|U|2719
9DOV|1|A1|G|2720
9DOV|1|A1|A|2721
*
9DOV|1|A1|U|2735
9DOV|1|A1|A|2736
9DOV|1|A1|C|2737
9DOV|1|A1|A|2738

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AD

Large ribosomal subunit protein uL18

Chain AQ

60S ribosomal protein L18-A

Chain AT

60S ribosomal protein L21-A

Chain Ab

Large ribosomal subunit protein eL29

Chain Ao

60S ribosomal protein L42-A