IL_9DOV_104
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GUCC*GC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DOV_104 not in the Motif Atlas
- Homologous match to IL_9PN5_097
- Geometric discrepancy: 0.1701
- The information below is about IL_9PN5_097
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71706.3
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
9DOV|1|A1|G|2770
9DOV|1|A1|U|2771
9DOV|1|A1|C|2772
9DOV|1|A1|C|2773
*
9DOV|1|A1|G|2787
9DOV|1|A1|C|2788
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AL
- 60S ribosomal protein L13-A
- Chain AQ
- 60S ribosomal protein L18-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ao
- 60S ribosomal protein L42-A
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