IL_9DOV_131

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CAACG*UUG

Length

8 nucleotides

Bulged bases

9DOV|1|A1|U|3259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|A1|C|3225
9DOV|1|A1|A|3226
9DOV|1|A1|A|3227
9DOV|1|A1|C|3228
9DOV|1|A1|G|3229
*
9DOV|1|A1|U|3258
9DOV|1|A1|U|3259
9DOV|1|A1|G|3260

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AE

60S ribosomal protein L6-A

Chain AM

60S ribosomal protein L14-A

Chain AO

60S ribosomal protein L16-A

Chain Af

60S ribosomal protein L33-A