IL_9DOV_147
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 9DOV|1|A3|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DOV_147 not in the Motif Atlas
- Geometric match to IL_8P9A_369
- Geometric discrepancy: 0.0771
- The information below is about IL_8P9A_369
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.4
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9DOV|1|A3|A|72
9DOV|1|A3|C|73
9DOV|1|A3|C|74
9DOV|1|A3|G|75
9DOV|1|A3|A|76
9DOV|1|A3|G|77
9DOV|1|A3|U|78
9DOV|1|A3|A|79
9DOV|1|A3|G|80
*
9DOV|1|A3|C|100
9DOV|1|A3|G|101
9DOV|1|A3|A|102
9DOV|1|A3|A|103
9DOV|1|A3|A|104
9DOV|1|A3|C|105
9DOV|1|A3|U|106
Current chains
- Chain A3
- 5S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AF
- 60S ribosomal protein L7-A
- Chain AI
- Large ribosomal subunit protein uL16
- Chain AS
- 60S ribosomal protein L20
- Chain AT
- 60S ribosomal protein L21-A
Coloring options: