IL_9DOV_182

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

9DOV|1|B5|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DOV_182 not in the Motif Atlas

Homologous match to IL_9PN5_172

Geometric discrepancy: 0.1104

The information below is about IL_9PN5_172

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9DOV|1|B5|G|557
9DOV|1|B5|U|558
9DOV|1|B5|C|559
*
9DOV|1|B5|G|586
9DOV|1|B5|C|587

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BD

Small ribosomal subunit protein uS3

Chain Be

40S ribosomal protein S30-A