IL_9DOV_210

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

AUAAGGAUUG*CUUGAUUU

Length

18 nucleotides

Bulged bases

9DOV|1|B5|G|1228, 9DOV|1|B5|A|1256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|B5|A|1224
9DOV|1|B5|U|1225
9DOV|1|B5|A|1226
9DOV|1|B5|A|1227
9DOV|1|B5|G|1228
9DOV|1|B5|G|1229
9DOV|1|B5|A|1230
9DOV|1|B5|U|1231
9DOV|1|B5|U|1232
9DOV|1|B5|G|1233
*
9DOV|1|B5|C|1252
9DOV|1|B5|U|1253
9DOV|1|B5|U|1254
9DOV|1|B5|G|1255
9DOV|1|B5|A|1256
9DOV|1|B5|U|1257
9DOV|1|B5|U|1258
9DOV|1|B5|U|1259

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BK

40S ribosomal protein S10-A

Chain BM

Small ribosomal subunit protein eS12

Chain Bd

Small ribosomal subunit protein uS14A

Chain Bf

RPS31 isoform 1