IL_9DOV_238

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DOV_238 not in the Motif Atlas

Geometric match to IL_8CRE_476

Geometric discrepancy: 0.0974

The information below is about IL_8CRE_476

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.5

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9DOV|1|B5|A|1678
9DOV|1|B5|G|1679
9DOV|1|B5|G|1680
9DOV|1|B5|A|1681
9DOV|1|B5|U|1682
*
9DOV|1|B5|A|1719
9DOV|1|B5|G|1720
9DOV|1|B5|A|1721
9DOV|1|B5|A|1722
9DOV|1|B5|U|1723

Current chains

Chain B5

18S rRNA

Nearby chains

Chain AW

Large ribosomal subunit protein eL24A

Chain BG

40S ribosomal protein S6-A

Chain BI

40S ribosomal protein S8-A