IL_9DOV_242

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UGUAUUGGUUACCCAUC*GUAAGGCUUUCA

Length

29 nucleotides

Bulged bases

9DOV|1|EC|U|6768, 9DOV|1|EC|A|6769, 9DOV|1|EC|U|6771, 9DOV|1|EC|U|6774, 9DOV|1|EC|U|6775, 9DOV|1|EC|C|6777, 9DOV|1|EC|C|6778, 9DOV|1|EC|C|6779, 9DOV|1|EC|A|6817, 9DOV|1|EC|U|6821, 9DOV|1|EC|U|6822

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|EC|U|6766
9DOV|1|EC|G|6767
9DOV|1|EC|U|6768
9DOV|1|EC|A|6769
9DOV|1|EC|U|6770
9DOV|1|EC|U|6771
9DOV|1|EC|G|6772
9DOV|1|EC|G|6773
9DOV|1|EC|U|6774
9DOV|1|EC|U|6775
9DOV|1|EC|A|6776
9DOV|1|EC|C|6777
9DOV|1|EC|C|6778
9DOV|1|EC|C|6779
9DOV|1|EC|A|6780
9DOV|1|EC|U|6781
9DOV|1|EC|C|6782
*
9DOV|1|EC|G|6814
9DOV|1|EC|U|6815
9DOV|1|EC|A|6816
9DOV|1|EC|A|6817
9DOV|1|EC|G|6818
9DOV|1|EC|G|6819
9DOV|1|EC|C|6820
9DOV|1|EC|U|6821
9DOV|1|EC|U|6822
9DOV|1|EC|U|6823
9DOV|1|EC|C|6824
9DOV|1|EC|A|6825

Current chains

Chain EC

TSV IRES RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain E

Large ribosomal subunit protein uL1A