IL_9DOV_243

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UUUG*CGUACGUGUA

Length

14 nucleotides

Bulged bases

9DOV|1|EC|U|6836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|EC|U|6834
9DOV|1|EC|U|6835
9DOV|1|EC|U|6836
9DOV|1|EC|G|6837
*
9DOV|1|EC|C|6846
9DOV|1|EC|G|6847
9DOV|1|EC|U|6848
9DOV|1|EC|A|6849
9DOV|1|EC|C|6850
9DOV|1|EC|G|6851
9DOV|1|EC|U|6852
9DOV|1|EC|G|6853
9DOV|1|EC|U|6854
9DOV|1|EC|A|6855

Current chains

Chain EC

TSV IRES RNA

Nearby chains

Chain BF

Rps5p