IL_9DP7_048
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UUAAG*CUAUA
- Length
- 10 nucleotides
- Bulged bases
- 9DP7|1|A1|U|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DP7_048 not in the Motif Atlas
- Homologous match to IL_9PN5_046
- Geometric discrepancy: 0.0502
- The information below is about IL_9PN5_046
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.4
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 27
Unit IDs
9DP7|1|A1|U|1167
9DP7|1|A1|U|1168
9DP7|1|A1|A|1169
9DP7|1|A1|A|1170
9DP7|1|A1|G|1171
*
9DP7|1|A1|C|1328
9DP7|1|A1|U|1329
9DP7|1|A1|A|1330
9DP7|1|A1|U|1331
9DP7|1|A1|A|1332
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A3
- 5S ribosomal RNA; 5S rRNA
- Chain AF
- 60S ribosomal protein L7-A
- Chain AQ
- 60S ribosomal protein L18-A
- Chain Ae
- Large ribosomal subunit protein eL32
- Chain Af
- 60S ribosomal protein L33-A
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