IL_9DP7_054

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UCUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

9DP7|1|A1|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|A1|U|1218
9DP7|1|A1|C|1219
9DP7|1|A1|U|1220
9DP7|1|A1|A|1221
9DP7|1|A1|G|1222
9DP7|1|A1|A|1223
9DP7|1|A1|C|1224
9DP7|1|A1|A|1225
9DP7|1|A1|G|1226
*
9DP7|1|A1|C|1283
9DP7|1|A1|C|1284
9DP7|1|A1|G|1285
9DP7|1|A1|A|1286
9DP7|1|A1|A|1287

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L9-A

Chain AS

60S ribosomal protein L20

Chain Am

Ubiquitin-60S ribosomal protein L40