IL_9DP7_061
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GUAGU(A2M)(OMG)*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DP7_061 not in the Motif Atlas
- Homologous match to IL_8GLP_300
- Geometric discrepancy: 0.038
- The information below is about IL_8GLP_300
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.4
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
9DP7|1|A1|G|1444
9DP7|1|A1|U|1445
9DP7|1|A1|A|1446
9DP7|1|A1|G|1447
9DP7|1|A1|U|1448
9DP7|1|A1|A2M|1449
9DP7|1|A1|OMG|1450
*
9DP7|1|A1|C|2354
9DP7|1|A1|G|2355
9DP7|1|A1|A|2356
9DP7|1|A1|A|2357
9DP7|1|A1|A|2358
9DP7|1|A1|C|2359
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AC
- Large ribosomal subunit protein uL4A
- Chain AP
- 60S ribosomal protein L17-A
Coloring options: