IL_9DP7_061

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|A1|G|1444
9DP7|1|A1|U|1445
9DP7|1|A1|A|1446
9DP7|1|A1|G|1447
9DP7|1|A1|U|1448
9DP7|1|A1|A2M|1449
9DP7|1|A1|OMG|1450
*
9DP7|1|A1|C|2354
9DP7|1|A1|G|2355
9DP7|1|A1|A|2356
9DP7|1|A1|A|2357
9DP7|1|A1|A|2358
9DP7|1|A1|C|2359

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

Large ribosomal subunit protein uL4A

Chain AP

60S ribosomal protein L17-A