IL_9DP7_167

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

9DP7|1|B5|U|313, 9DP7|1|B5|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|B5|U|311
9DP7|1|B5|A|312
9DP7|1|B5|U|313
9DP7|1|B5|C|314
9DP7|1|B5|A|315
9DP7|1|B5|A|316
*
9DP7|1|B5|U|348
9DP7|1|B5|U|349
9DP7|1|B5|U|350
9DP7|1|B5|C|351
9DP7|1|B5|A|352
9DP7|1|B5|A|353
9DP7|1|B5|C|354
9DP7|1|B5|G|355

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A

Chain BL

40S ribosomal protein S11-A

Chain BX

40S ribosomal protein S23-A