IL_9DP7_178
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- (OMG)UGCCAG*CGG(OMU)AAUUC
- Length
- 16 nucleotides
- Bulged bases
- 9DP7|1|B5|A|579, 9DP7|1|B5|U|581, 9DP7|1|B5|U|582
- QA status
- Modified nucleotides: OMG, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DP7|1|B5|OMG|562
9DP7|1|B5|U|563
9DP7|1|B5|G|564
9DP7|1|B5|C|565
9DP7|1|B5|C|566
9DP7|1|B5|A|567
9DP7|1|B5|G|568
*
9DP7|1|B5|C|575
9DP7|1|B5|G|576
9DP7|1|B5|G|577
9DP7|1|B5|OMU|578
9DP7|1|B5|A|579
9DP7|1|B5|A|580
9DP7|1|B5|U|581
9DP7|1|B5|U|582
9DP7|1|B5|C|583
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BD
- Small ribosomal subunit protein uS3
- Chain BX
- 40S ribosomal protein S23-A
- Chain Be
- 40S ribosomal protein S30-A
- Chain EC
- TSV IRES RNA
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