IL_9DP7_187
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GAAAAAAUU*AUAUU(A2M)GC
- Length
- 17 nucleotides
- Bulged bases
- 9DP7|1|B5|U|794
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DP7|1|B5|G|751
9DP7|1|B5|A|752
9DP7|1|B5|A|753
9DP7|1|B5|A|754
9DP7|1|B5|A|755
9DP7|1|B5|A|756
9DP7|1|B5|A|757
9DP7|1|B5|U|758
9DP7|1|B5|U|759
*
9DP7|1|B5|A|791
9DP7|1|B5|U|792
9DP7|1|B5|A|793
9DP7|1|B5|U|794
9DP7|1|B5|U|795
9DP7|1|B5|A2M|796
9DP7|1|B5|G|797
9DP7|1|B5|C|798
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BE
- 40S ribosomal protein S4-A
- Chain BJ
- 40S ribosomal protein S9-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BW
- Small ribosomal subunit protein uS8A
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