IL_9DP7_193

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

9DP7|1|B5|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|B5|U|893
9DP7|1|B5|U|894
9DP7|1|B5|G|895
9DP7|1|B5|U|896
9DP7|1|B5|C|897
9DP7|1|B5|A|898
9DP7|1|B5|G|899
*
9DP7|1|B5|C|910
9DP7|1|B5|U|911
9DP7|1|B5|U|912
9DP7|1|B5|G|913
9DP7|1|B5|G|914
9DP7|1|B5|A|915
9DP7|1|B5|U|916
9DP7|1|B5|U|917
9DP7|1|B5|U|918
9DP7|1|B5|A|919

Current chains

Chain B5

18S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain BB

Small ribosomal subunit protein eS1A

Chain BO

40S ribosomal protein S14-A