IL_9DP7_206

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AUAAGGAUUG*CUUGAUUU

Length

18 nucleotides

Bulged bases

9DP7|1|B5|G|1228

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|B5|A|1224
9DP7|1|B5|U|1225
9DP7|1|B5|A|1226
9DP7|1|B5|A|1227
9DP7|1|B5|G|1228
9DP7|1|B5|G|1229
9DP7|1|B5|A|1230
9DP7|1|B5|U|1231
9DP7|1|B5|U|1232
9DP7|1|B5|G|1233
*
9DP7|1|B5|C|1252
9DP7|1|B5|U|1253
9DP7|1|B5|U|1254
9DP7|1|B5|G|1255
9DP7|1|B5|A|1256
9DP7|1|B5|U|1257
9DP7|1|B5|U|1258
9DP7|1|B5|U|1259

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BK

40S ribosomal protein S10-A

Chain BM

Small ribosomal subunit protein eS12

Chain Bd

Small ribosomal subunit protein uS14A

Chain Bf

RPS31 isoform 1