IL_9DP7_212
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- C(4AC)G*CA(OMG)G
- Length
- 7 nucleotides
- Bulged bases
- 9DP7|1|B5|A|1427
- QA status
- Modified nucleotides: 4AC, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DP7_212 not in the Motif Atlas
- Geometric match to IL_8GLP_272
- Geometric discrepancy: 0.174
- The information below is about IL_8GLP_272
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81485.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 32
Unit IDs
9DP7|1|B5|C|1279
9DP7|1|B5|4AC|1280
9DP7|1|B5|G|1281
*
9DP7|1|B5|C|1426
9DP7|1|B5|A|1427
9DP7|1|B5|OMG|1428
9DP7|1|B5|G|1429
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BC
- Small ribosomal subunit protein uS5
- Chain BD
- Small ribosomal subunit protein uS3
- Chain BQ
- 40S ribosomal protein S16-A
- Chain BU
- Small ribosomal subunit protein uS10
- Chain Bd
- Small ribosomal subunit protein uS14A
- Chain EC
- TSV IRES RNA
Coloring options: