IL_9DP7_218
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CUA*UGGAAG
- Length
- 9 nucleotides
- Bulged bases
- 9DP7|1|B5|U|1390
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DP7_218 not in the Motif Atlas
- Geometric match to IL_9PN5_215
- Geometric discrepancy: 0.1577
- The information below is about IL_9PN5_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_97340.2
- Basepair signature
- cWW-tWH-R-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
9DP7|1|B5|C|1389
9DP7|1|B5|U|1390
9DP7|1|B5|A|1391
*
9DP7|1|B5|U|1407
9DP7|1|B5|G|1408
9DP7|1|B5|G|1409
9DP7|1|B5|A|1410
9DP7|1|B5|A|1411
9DP7|1|B5|G|1412
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BF
- Rps5p
- Chain BQ
- 40S ribosomal protein S16-A
- Chain BR
- 40S ribosomal protein S17-A
- Chain Bg
- Guanine nucleotide-binding protein subunit beta-like protein
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