IL_9DP7_223

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9DP7|1|B5|C|1637, 9DP7|1|B5|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|B5|C|1636
9DP7|1|B5|C|1637
9DP7|1|B5|G|1638
*
9DP7|1|B5|C|1764
9DP7|1|B5|A|1765
9DP7|1|B5|A|1766
9DP7|1|B5|G|1767

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BO

40S ribosomal protein S14-A

Chain Ba

Small ribosomal subunit protein eS26B

Chain EC

TSV IRES RNA