IL_9DUK_022

3D structure

PDB id

9DUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of mutant 30S subunit with extended helix 26, version 3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DUK_022 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.1703

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

9DUK|1|A|G|450
9DUK|1|A|A|451
9DUK|1|A|A|452
9DUK|1|A|G|453
9DUK|1|A|G|454
9DUK|1|A|G|455
*
9DUK|1|A|C|477
9DUK|1|A|A|478
9DUK|1|A|U|479
9DUK|1|A|U|480
9DUK|1|A|G|481
9DUK|1|A|A|482
9DUK|1|A|C|483

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16