IL_9DUK_048

3D structure

PDB id

9DUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of mutant 30S subunit with extended helix 26, version 3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

9DUK|1|A|U|1126

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DUK_048 not in the Motif Atlas

Homologous match to IL_5J7L_051

Geometric discrepancy: 0.1521

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

9DUK|1|A|G|1124
9DUK|1|A|U|1125
9DUK|1|A|U|1126
9DUK|1|A|G|1127
9DUK|1|A|C|1128
*
9DUK|1|A|G|1144
9DUK|1|A|A|1145
9DUK|1|A|A|1146
9DUK|1|A|C|1147
9DUK|1|A|U|1148
9DUK|1|A|C|1149

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10