IL_9DUL_025

3D structure

PDB id

9DUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of mutant 30S subunit with extended helix 26, version 4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

9DUL|1|A|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DUL_025 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.0777

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9DUL|1|A|C|569
9DUL|1|A|G|570
9DUL|1|A|U|571
9DUL|1|A|A|572
9DUL|1|A|A|573
9DUL|1|A|A|574
9DUL|1|A|G|575
*
9DUL|1|A|C|880
9DUL|1|A|G|881

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain Q

Small ribosomal subunit protein uS17