IL_9DUL_058

3D structure

PDB id

9DUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of mutant 30S subunit with extended helix 26, version 4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

9DUL|1|A|A|1492, 9DUL|1|A|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DUL_058 not in the Motif Atlas

Homologous match to IL_4LFB_070

Geometric discrepancy: 0.3325

The information below is about IL_4LFB_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29925.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

9

Unit IDs

9DUL|1|A|5MC|1407
9DUL|1|A|A|1408
9DUL|1|A|C|1409
*
9DUL|1|A|G|1491
9DUL|1|A|A|1492
9DUL|1|A|A|1493
9DUL|1|A|G|1494

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12