IL_9E0N_023

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

GUGAAG*UGGAGGC

Length

13 nucleotides

Bulged bases

9E0N|1|A|G|844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0N_023 not in the Motif Atlas

Geometric match to IL_8P9A_451

Geometric discrepancy: 0.1992

The information below is about IL_8P9A_451

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9E0N|1|A|G|817
9E0N|1|A|U|818
9E0N|1|A|G|819
9E0N|1|A|A|820
9E0N|1|A|A|821
9E0N|1|A|G|822
*
9E0N|1|A|U|839
9E0N|1|A|G|840
9E0N|1|A|G|841
9E0N|1|A|A|842
9E0N|1|A|G|843
9E0N|1|A|G|844
9E0N|1|A|C|845

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2