IL_9E0N_032

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

GAU*AGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0N_032 not in the Motif Atlas

Geometric match to IL_3NJ7_003

Geometric discrepancy: 0.1533

The information below is about IL_3NJ7_003

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

9E0N|1|A|G|986
9E0N|1|A|A|987
9E0N|1|A|U|988
*
9E0N|1|A|A|1020
9E0N|1|A|G|1021
9E0N|1|A|C|1022

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

Large ribosomal subunit protein uL16

Chain W

Large ribosomal subunit protein bL25