IL_9E0N_033

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CCGAUG*CUGACG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0N_033 not in the Motif Atlas

Geometric match to IL_8P9A_410

Geometric discrepancy: 0.2905

The information below is about IL_8P9A_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9E0N|1|A|C|991
9E0N|1|A|C|992
9E0N|1|A|G|993
9E0N|1|A|A|994
9E0N|1|A|U|995
9E0N|1|A|G|996
*
9E0N|1|A|C|1012
9E0N|1|A|U|1013
9E0N|1|A|G|1014
9E0N|1|A|A|1015
9E0N|1|A|C|1016
9E0N|1|A|G|1017

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

Large ribosomal subunit protein uL16

Chain W

Large ribosomal subunit protein bL25