3D structure

PDB id
9E0N (explore in PDB, NAKB, or RNA 3D Hub)
Description
M. smegmatis unmethylated 70S ribosome structure
Experimental method
ELECTRON MICROSCOPY
Resolution
3.24 Å

Loop

Sequence
GGAAAAG*CGAUAAUGUAGCGGGGC
Length
24 nucleotides
Bulged bases
9E0N|1|A|U|1245, 9E0N|1|A|U|1248
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9E0N_041 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.151
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

9E0N|1|A|G|1142
9E0N|1|A|G|1143
9E0N|1|A|A|1144
9E0N|1|A|A|1145
9E0N|1|A|A|1146
9E0N|1|A|A|1147
9E0N|1|A|G|1148
*
9E0N|1|A|C|1242
9E0N|1|A|G|1243
9E0N|1|A|A|1244
9E0N|1|A|U|1245
9E0N|1|A|A|1246
9E0N|1|A|A|1247
9E0N|1|A|U|1248
9E0N|1|A|G|1249
9E0N|1|A|U|1250
9E0N|1|A|A|1251
9E0N|1|A|G|1252
9E0N|1|A|C|1253
9E0N|1|A|G|1254
9E0N|1|A|G|1255
9E0N|1|A|G|1256
9E0N|1|A|G|1257
9E0N|1|A|C|1258

Current chains

Chain A
23S rRNA

Nearby chains

Chain 7
50S ribosomal protein L36
Chain 8
50S ribosomal protein bL37
Chain D
Large ribosomal subunit protein uL3
Chain K
Large ribosomal subunit protein uL13
Chain N
Large ribosomal subunit protein uL16

Coloring options:


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