IL_9E0N_046

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

9E0N|1|A|G|1363

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0N_046 not in the Motif Atlas

Geometric match to IL_7A0S_041

Geometric discrepancy: 0.1944

The information below is about IL_7A0S_041

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

9E0N|1|A|C|1311
9E0N|1|A|G|1312
9E0N|1|A|U|1313
*
9E0N|1|A|A|1362
9E0N|1|A|G|1363
9E0N|1|A|U|1364
9E0N|1|A|G|1365

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain M

Large ribosomal subunit protein uL15

Chain R

Large ribosomal subunit protein bL20