IL_9E0N_076

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

9E0N|1|A|A|2123, 9E0N|1|A|A|2124

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0N_076 not in the Motif Atlas

Geometric match to IL_8P9A_313

Geometric discrepancy: 0.2005

The information below is about IL_8P9A_313

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.4

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

9E0N|1|A|U|2058
9E0N|1|A|G|2059
*
9E0N|1|A|U|2122
9E0N|1|A|A|2123
9E0N|1|A|A|2124
9E0N|1|A|A|2125

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2