IL_9E0N_093

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CAA*UGUUG

Length

8 nucleotides

Bulged bases

9E0N|1|A|U|2543, 9E0N|1|A|U|2544

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0N_093 not in the Motif Atlas

Geometric match to IL_9DFE_082

Geometric discrepancy: 0.3669

The information below is about IL_9DFE_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9E0N|1|A|C|2521
9E0N|1|A|A|2522
9E0N|1|A|A|2523
*
9E0N|1|A|U|2541
9E0N|1|A|G|2542
9E0N|1|A|U|2543
9E0N|1|A|U|2544
9E0N|1|A|G|2545

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

Large ribosomal subunit protein uL5

Chain P

Large ribosomal subunit protein uL18