IL_9E0N_094

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0N_094 not in the Motif Atlas

Geometric match to IL_5J7L_333

Geometric discrepancy: 0.1356

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

9E0N|1|A|C|2574
9E0N|1|A|G|2575
9E0N|1|A|A|2576
9E0N|1|A|G|2577
*
9E0N|1|A|C|2588
9E0N|1|A|G|2589
9E0N|1|A|A|2590
9E0N|1|A|G|2591

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL35

Chain M

Large ribosomal subunit protein uL15

Chain X

Large ribosomal subunit protein bL27